Arta Seyedian's Website

About Me

Hello. My name is Arta Seyedian.

My career in tech began with a strong foundation in bioinformatics, which I approached with a biologist's background12. Over the years, I've been fortunate enough to explore various subfields and research niches, diving deep into the expansive world of bioinformatics:

Currently, I'm working as a contracted Web App Developer for PEDsnet, a large, inter-institutional pediatric clinical research data-sharing consortium. My role involves setting up and customizing two instances of the open-source metadata repository DSpace to manage codesets (collections of codes used for a given clinical concept, such as diagnosis or procedure codes). These repositories enable investigators around the world to collaboratively share pediatric clinical research data.

To meet these challenges, I've been rapidly learning and applying new skills in TypeScript, Angular, web development, and backend management to tailor these repositories to the specific needs of our stakeholders.

Skills

  • R, Python, Java, SQL
  • Node.js, Angular, TypeScript
  • JavaScript, HTML/CSS
  • ggplot2, Seurat, Bioconductor
  • NumPy, pandas, ScanPy
  • DESeq2, EdgeR
  • Distributed Computing: Slurm, Sun Grid Engine
  • Cloud: Google Cloud, AWS
  • Workflow: Prefect, NextFlow, Snakemake, Airflow
  • Containerization: Docker

Contact

References

  1. Pivotal Role of Adenosine Neurotransmission in Restless Legs Syndrome, 2018
  2. Pharmacological targeting of G protein-coupled receptor heteromers, 2022
  3. Amygdala and anterior cingulate transcriptomes from individuals with bipolar disorder reveal downregulated neuroimmune and synaptic pathways, 2022
  4. A data-driven single-cell and spatial transcriptomic map of the human prefrontal cortex, 2024
  5. Spatial and Single Cell Mapping of Castleman Disease Reveals Key Stromal Cell Types and Cytokine Pathways, bioRxiv (2024)